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CBE 455/555: Elements of Synthetic Biology and Metabolic Engineering (2011-present).

CBE 350: Reactor Design Fundamentals (2012-present).

CBE 494: Creative undergraduate research projects (2011-present).






CASPER: CRISPR Associated Software for Pathway Engineering and Research. Please visit our CASPER website. For Github download, use this link . For CASPER paper, you can download this accepted version that was published in CRISPR Journal.

MODCELL: Modular Cell design software. Please also see the documentation.




Metabolic models


iAT601: Genome-scale metabolic model of Clostridium thermocellum DSM1313. You can also view the online, open-source manuscript. For cellobiose assimilation simulation, use iAT601_CB.xml ; for cellulose assimulation simulation, use iAT601_CE.xml.

iCBI655. An updated genome-scale metabolic model of Clostridium thermocellum DSM1313.





Our software and sources codes can be found at our Github repositories












  Updated on 11.29.2023